association dataset threshold value standardized value (+/-)-catechin-3012 CMAP Signatures of Differentially Expressed Genes for Small Molecules 1.0 null 143B CCLE Cell Line Gene CNV Profiles -1.0 -3.21048 143B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -3.6113 20035825-TableS7a GeneSigDB Published Gene Signatures 1.0 null 537 MEL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.892195 786 BioGPS Cell Line Gene Expression Profiles 1.0 0.836667 786O CCLE Cell Line Gene Expression Profiles 1.0 1.35322 A-375 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.824114 A-CA-04-2009(H1N1)_0Hour_23935999_GSE47962 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.5812 A-Vietnam-1203_CIP048_RG3-2004(H5N1)mutPB2-627E_7Hour_None_GSE43203 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.03665 A172 BioGPS Cell Line Gene Expression Profiles -1.0 -2.08881 A4FUK CCLE Cell Line Gene Expression Profiles 1.0 1.34902 AG-013608-6440 CMAP Signatures of Differentially Expressed Genes for Small Molecules -1.0 null ALVA31 BioGPS Cell Line Gene Expression Profiles 1.0 2.41625 AMO-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.27005 AMO1 CCLE Cell Line Gene CNV Profiles 1.0 1.75103 AdrenalCortex BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.04271 BCPAP CCLE Cell Line Gene CNV Profiles -1.0 -1.75795 BHY Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.27951 BJHTERT CCLE Cell Line Gene Expression Profiles 1.0 1.37138 BRCA1 JASPAR Predicted Transcription Factor Targets 1.0 null BRD-K78599730_manumycin A_SNGM_6.0_h_9.08_um LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules -1.0 null BRD-K82685933_BTB06091SC_HCC515_6.0_h_10.0_um LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules -1.0 null BXPC-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.94565 BXPC3 CCLE Cell Line Gene Expression Profiles -1.0 -3.09411 CAKI-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24416 CAL 54 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.892195 CAL-120 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.45338 CAL-12T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.99765 CAL120 CCLE Cell Line Gene CNV Profiles -1.0 -1.32646 CAL148 CCLE Cell Line Gene CNV Profiles 1.0 1.34835 CALU3 CCLE Cell Line Gene Expression Profiles 1.0 1.95682 CAMA1 CCLE Cell Line Gene CNV Profiles 1.0 1.59166 CAOV3 CCLE Cell Line Gene CNV Profiles -1.0 -1.64494 CCFSTTG1 CCLE Cell Line Gene Expression Profiles -1.0 -1.83503 CCRT CEM BioGPS Cell Line Gene Expression Profiles 1.0 1.1802 CEBPB ENCODE Transcription Factor Targets 1.0 null CEBPB_A549_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CEBPB_HeLa-S3_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CEBPB_IMR-90_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CHP-212 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.935474 CHP212 CCLE Cell Line Gene Expression Profiles -1.0 -1.49701 CJM CCLE Cell Line Gene CNV Profiles -1.0 -1.44406 COLO 679 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.940708 COLO775 CCLE Cell Line Gene Expression Profiles 1.0 1.46619 CORL24 CCLE Cell Line Gene Expression Profiles -1.0 -1.63555 CORL95 CCLE Cell Line Gene Expression Profiles -1.0 -1.60671 CTCF ENCODE Transcription Factor Targets 1.0 null CTCF_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_epithelial cell of esophagus_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CardiacMyocytes BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.25829 CiliaryGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.89119 DETROIT562 CCLE Cell Line Gene Expression Profiles 1.0 1.36809 DFCI024 CCLE Cell Line Gene Expression Profiles 1.0 1.51041 DU 145 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03227 DU4475 CCLE Cell Line Gene CNV Profiles 1.0 1.47392 DU4475 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.05507 EBC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.36786 EBC1 CCLE Cell Line Gene CNV Profiles -1.0 -1.47095 EBF1 ENCODE Transcription Factor Targets 1.0 null EBF1_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EBF1_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null EBNA2-21746931-IB4-LCL-HUMAN CHEA Transcription Factor Binding Site Profiles 1.0 null EFM-19 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.901573 ESR1_KD_GDS4061_453_human_MCF7 breast cancer cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null EWS502 CCLE Cell Line Gene Expression Profiles 1.0 1.60012 FOS ENCODE Transcription Factor Targets 1.0 null FOS_MCF 10A_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOS_MCF 10A_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOS_MCF 10A_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOS_MCF 10A_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOXL1 JASPAR Predicted Transcription Factor Targets 1.0 null G111 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.546 G112 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.66988 G122 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.36151 G140 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.94565 G61 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.04796 G96 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.54519 GA-10 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.866095 GATA2 JASPAR Predicted Transcription Factor Targets 1.0 null GCIY CCLE Cell Line Gene Expression Profiles -1.0 -1.63481 GM2345 BioGPS Cell Line Gene Expression Profiles -1.0 -0.905624 GR-M Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.824114 GTEX-N7MS-0126-SM-3TW8O GTEx Tissue Sample Gene Expression Profiles 1.0 0.973944 GTEX-N7MS-0926-SM-2HMIZ GTEx Tissue Sample Gene Expression Profiles 1.0 0.990559 GTEX-N7MS-2526-SM-2D7W3 GTEx Tissue Sample Gene Expression Profiles 1.0 1.24302 GTEX-N7MT-1426-SM-3LK5M GTEx Tissue Sample Gene Expression Profiles 1.0 0.85122 GTEX-N7MT-1926-SM-3LK5N GTEx Tissue Sample Gene Expression Profiles 1.0 1.02584 GTEX-NFK9-2026-SM-3LK5K GTEx Tissue Sample Gene Expression Profiles 1.0 0.939985 GTEX-NFK9-2226-SM-3MJGP GTEx Tissue Sample Gene Expression Profiles 1.0 0.836318 GTEX-NPJ8-2126-SM-3MJGK GTEx Tissue Sample Gene Expression Profiles 1.0 1.21478 GTEX-NPJ8-2626-SM-2D7W2 GTEx Tissue Sample Gene Expression Profiles 1.0 1.81855 GTEX-OHPK-1526-SM-3MJGM GTEx Tissue Sample Gene Expression Profiles 1.0 1.33749 GTEX-OHPL-0126-SM-2HMJ7 GTEx Tissue Sample Gene Expression Profiles 1.0 0.824874 GTEX-OHPM-2126-SM-3LK75 GTEx Tissue Sample Gene 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Sample Gene Expression Profiles 1.0 1.63984 GTEX-WI4N-2726-SM-3LK7Y GTEx Tissue Sample Gene Expression Profiles 1.0 0.953419 GTEX-WK11-0526-SM-3NB3O GTEx Tissue Sample Gene Expression Profiles 1.0 0.995059 GTEX-WL46-3026-SM-3LK7Z GTEx Tissue Sample Gene Expression Profiles 1.0 1.22059 GTEX-WRHK-0005-SM-3MJF5 GTEx Tissue Sample Gene Expression Profiles 1.0 1.06818 GTEX-WXYG-0005-SM-3NB3M GTEx Tissue Sample Gene Expression Profiles 1.0 0.897942 GTEX-WYJK-1626-SM-3NM9J GTEx Tissue Sample Gene Expression Profiles 1.0 0.85862 GTEX-WYVS-0326-SM-3NM9V GTEx Tissue Sample Gene Expression Profiles 1.0 1.08744 GTEX-WZTO-0426-SM-3NM99 GTEx Tissue Sample Gene Expression Profiles 1.0 0.889465 GTEX-X3Y1-2426-SM-3P5Z7 GTEx Tissue Sample Gene Expression Profiles 1.0 0.853241 GTEX-X4EO-2926-SM-4E3JH GTEx Tissue Sample Gene Expression Profiles 1.0 0.824972 GTEX-X4EP-0526-SM-3P5YW GTEx Tissue Sample Gene Expression Profiles 1.0 1.27365 GTEX-X5EB-1626-SM-4E3IV GTEx Tissue Sample Gene Expression Profiles 1.0 1.82098 GTEX-X62O-0005-SM-46MV1 GTEx Tissue Sample Gene Expression Profiles 1.0 1.30593 GTEX-XAJ8-0006-SM-46MVM GTEx Tissue Sample Gene Expression Profiles 1.0 0.871673 GTEX-XAJ8-0526-SM-47JYK GTEx Tissue Sample Gene Expression Profiles 1.0 1.70167 GTEX-XBED-1426-SM-4AT4G GTEx Tissue Sample Gene Expression Profiles 1.0 1.49146 GTEX-XOT4-1426-SM-4B65T GTEx Tissue Sample Gene Expression Profiles 1.0 0.879678 GTEX-XPVG-0526-SM-4B65N GTEx Tissue Sample Gene Expression Profiles 1.0 1.34904 GTEX-XQ3S-0926-SM-4BOPI GTEx Tissue Sample Gene Expression Profiles 1.0 1.20799 GTEX-XQ3S-2526-SM-4BOOG GTEx Tissue Sample Gene Expression Profiles 1.0 1.0456 GTEX-XQ8I-1126-SM-4BOO2 GTEx Tissue Sample Gene Expression Profiles 1.0 1.57962 GTEX-XQ8I-2026-SM-4BOOL GTEx Tissue Sample Gene Expression Profiles 1.0 1.4119 GTEX-XUW1-0626-SM-4BOP4 GTEx Tissue Sample Gene Expression Profiles 1.0 0.858751 GTEX-XUW1-1826-SM-4BOQD GTEx Tissue Sample Gene Expression Profiles 1.0 0.847046 GTEX-XUZC-0726-SM-4BOPH GTEx Tissue Sample Gene Expression Profiles 1.0 1.45398 GTEX-XUZC-1226-SM-4BRVJ GTEx Tissue Sample Gene Expression Profiles 1.0 0.857578 GTEX-XUZC-1326-SM-4BRV2 GTEx Tissue Sample Gene Expression Profiles 1.0 1.40325 GTEX-XV7Q-1326-SM-4BRWM GTEx Tissue Sample Gene Expression Profiles 1.0 1.03246 GTEX-XXEK-0126-SM-4BRVU GTEx Tissue Sample Gene Expression Profiles 1.0 0.862576 GTEX-XXEK-0826-SM-4BRWG GTEx Tissue Sample Gene Expression Profiles 1.0 1.24761 GTEX-XXEK-1026-SM-4BRUW GTEx Tissue Sample Gene Expression Profiles 1.0 1.17643 GTEX-XXEK-1726-SM-4BRVB GTEx Tissue Sample Gene Expression Profiles 1.0 3.45591 GlobusPallidus BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.970124 H3K36me3_Adipose Derived Mesenchymal Stem Cell Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null H3K36me3_Adult Kidney Roadmap Epigenomics Histone Modification Site Profiles 1.0 null H3K36me3_Brain Cingulate Gyrus Roadmap Epigenomics Histone Modification Site Profiles 1.0 null H3K36me3_GM06990_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K36me3_GM12878_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K36me3_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K36me3_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K36me3_cardiac mesoderm_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K36me3_cardiac mesoderm_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K36me3_endothelial cell of umbilical vein_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K36me3_endothelial cell of umbilical vein_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K36me3_keratinocyte_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me1_H1-hESC_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null H3K79me2_A549_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null H3K79me2_HeLa-S3_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null H3K79me2_keratinocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null H3K79me2_mammary epithelial cell_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null H4K20me1_A549_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null H4K20me1_CD14-positive monocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null H4K20me1_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null H4K20me1_fibroblast of dermis_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null HCC1011 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.48168 HCC1171 CCLE Cell Line Gene CNV Profiles 1.0 2.40988 HCC1171 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.15038 HCC1263 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.7854 HCC1395 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.892195 HCC15 CCLE Cell Line Gene Expression Profiles -1.0 -2.92412 HCC1576 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16829 HCC1599 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.84727 HCC193 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.39168 HCC1937 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.89307 HCC2157 COSMIC Cell Line Gene CNV Profiles 1.0 2.59653 HCC2218 CCLE Cell Line Gene CNV Profiles 1.0 2.03707 HCC2218 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.12318 HCC2270 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.901573 HCC2279 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.838011 HCC2302 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.66988 HCC2814 CCLE Cell Line Gene Expression Profiles 1.0 1.538 HCC2998 BioGPS Cell Line Gene Expression Profiles -1.0 -0.829743 HCC60 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.37076 HCC95 CCLE Cell Line Gene CNV Profiles -1.0 -1.44319 HEC265 CCLE Cell Line Gene Expression Profiles 1.0 1.43884 HEK 293 T-rex BioGPS Cell Line Gene Expression Profiles 1.0 0.947481 HER2_KO_GDS4056_567_human_breast biopsies GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null HL60 BioGPS Cell Line Gene Expression Profiles 1.0 1.34851 HL60 CCLE Cell Line Gene Expression Profiles 1.0 1.68617 HMEL CCLE Cell Line Gene Expression Profiles 1.0 2.46473 HMY-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.50845 HOS CCLE Cell Line Gene CNV Profiles -1.0 -2.32288 HS 578T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.04879 HS 746T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.30711 HSG BioGPS Cell Line Gene Expression Profiles 1.0 1.58015 HTK CCLE Cell Line Gene CNV Profiles -1.0 -2.11709 HUPT4 CCLE Cell Line Gene CNV Profiles -1.0 -1.59297 Heart BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.06853 IGROV1 CCLE Cell Line Gene Expression Profiles 1.0 3.38128 IL21_UP.V1 MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations -1.0 null IOMMLEE CCLE Cell Line Gene Expression Profiles 1.0 1.66896 IRF4 ENCODE Transcription Factor Targets 1.0 null IRF4_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null JIMT-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.09973 JMSU1 CCLE Cell Line Gene CNV Profiles 1.0 1.41245 KARPAS299 CCLE Cell Line Gene CNV Profiles -1.0 -2.30417 KE39 CCLE Cell Line Gene Expression Profiles 1.0 1.51145 KELLY Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.866095 KHM-1B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.07219 KHM1B CCLE Cell Line Gene CNV Profiles 1.0 2.74473 KMS-11 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.81391 KMS11 CCLE Cell Line Gene CNV Profiles 1.0 1.75997 KMS20 CCLE Cell Line Gene CNV Profiles 1.0 2.04992 KPNSI9S CCLE Cell Line Gene CNV Profiles 1.0 1.36837 Kidney BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.891208 LN-18 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.04796 LN443 CCLE Cell Line Gene Expression Profiles 1.0 1.72677 LN464 CCLE Cell Line Gene Expression Profiles 1.0 1.85218 LP-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.39424 LP1 CCLE Cell Line Gene CNV Profiles 1.0 1.44281 Lymphoma_burkitts(Raji) BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.61383 MDA-MB-361 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.18457 MDA-MB-435 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.04796 ME-180 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.18457 MIR122_OE_GDS3470_573_human_Embryonic stem cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null MM.1S Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.07899 MOLP-8 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.863835 MOLP8 CCLE Cell Line Gene CNV Profiles 1.0 1.47664 MPP89 CCLE Cell Line Gene Expression Profiles -1.0 -1.76386 MX-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.10133 NAMALWA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.86356 NB1 CCLE Cell Line Gene CNV Profiles 1.0 1.63307 NCI-H1395 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.1973 NCI-H1568 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.944814 NCI-H1693 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.91 NCI-H1792 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.83417 NCI-H187 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.32076 NCI-H1876 COSMIC Cell Line Gene CNV Profiles 1.0 2.59653 NCI-H1882 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.78383 NCI-H2110 COSMIC Cell Line Gene CNV Profiles 1.0 2.59653 NCI-H2110 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.49576 NCI-H2804 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11452 NCI-H345 COSMIC Cell Line Gene CNV Profiles 1.0 2.59653 NCI-H345 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.97775 NCI-H810 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16727 NCI-H929 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.46405 NCIH1385 CCLE Cell Line Gene CNV Profiles 1.0 1.50123 NCIH1436 CCLE Cell Line Gene Expression Profiles -1.0 -2.1071 NCIH1876 CCLE Cell Line Gene CNV Profiles 1.0 2.5137 NCIH211 CCLE Cell Line Gene CNV Profiles -1.0 -1.93012 NCIH2110 CCLE Cell Line Gene CNV Profiles 1.0 1.84765 NCIH2227 CCLE Cell Line Gene Expression Profiles -1.0 -1.79221 NCIH23 CCLE Cell Line Gene CNV Profiles 1.0 1.56988 NCIH3255 CCLE Cell Line Gene Expression Profiles 1.0 1.35521 NCIH446 CCLE Cell Line Gene Expression Profiles -1.0 -1.54902 NCIH526 CCLE Cell Line Gene CNV Profiles 1.0 1.43759 NCIH810 CCLE Cell Line Gene CNV Profiles 1.0 1.38805 NCIH929 CCLE Cell Line Gene CNV Profiles 1.0 1.77983 NCIH929 CCLE Cell Line Gene Expression Profiles 1.0 1.80465 NIH:OVCAR-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.969872 NOS-1 COSMIC Cell Line Gene CNV Profiles 1.0 2.59653 NTERA-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.97775 NU-DUL-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.00884 OACP4C COSMIC Cell Line Gene CNV Profiles 1.0 2.59653 OCIAML3 CCLE Cell Line Gene Expression Profiles -1.0 -1.48379 OCILY3 CCLE Cell Line Gene Expression Profiles 1.0 2.15158 OPM-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.61248 OPM1 CCLE Cell Line Gene CNV Profiles 1.0 1.37206 OPM2 CCLE Cell Line Gene CNV Profiles 1.0 1.88865 OVCA 432 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.21086 OVCAR-8 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.996021 OVKATE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.07899 OVMANA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.998502 P3HR1 CCLE Cell Line Gene CNV Profiles -1.0 -2.28472 PA-TU-8902 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.973265 PANC 04.03 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.10133 PANC 05.04 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.89307 PANC 08.13 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.94565 PAX5 ENCODE Transcription Factor Targets 1.0 null PAX5_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null PAX5_GM12878_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null PECAPJ49 CCLE Cell Line Gene CNV Profiles -1.0 -1.9223 PK-59 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.08279 PK59 CCLE Cell Line Gene CNV Profiles -1.0 -1.64806 POLR2A ENCODE Transcription Factor Targets 1.0 null POLR2A_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_GM12891_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_GM12891_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_GM12892_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_GM12892_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_HeLa-S3_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2AphosphoS5_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2AphosphoS5_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2AphosphoS5_GM12891_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2AphosphoS5_GM12891_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2AphosphoS5_GM12892_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2AphosphoS5_GM12892_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POU2F2 ENCODE Transcription Factor Targets 1.0 null POU2F2_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POU2F2_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POU2F2_GM12891_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POU2F2_GM12891_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null PTEN_KD_GDS2958_101_human_SKBR-3 MAMMARY ADENOCARCINOMA cell line GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null RBPJ CHEA Transcription Factor Targets 1.0 null RBPJ-21746931-IB4-LCL-HUMAN CHEA Transcription Factor Binding Site Profiles 1.0 null RERF-LC-KJ Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.50747 RERF-LC-OK Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.43625 RERFLCMS CCLE Cell Line Gene Expression Profiles -1.0 -1.87804 RERFLCSQ1 CCLE Cell Line Gene CNV Profiles -1.0 -1.6966 RMGI CCLE Cell Line Gene Expression Profiles 1.0 1.34789 RPMI-7951 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.70357 RT112 CCLE Cell Line Gene Expression Profiles -1.0 -1.47968 SARS-BatSRBD_84Hour_23935999_GSE47961 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.5027 SCC-15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.48168 SCC4 CCLE Cell Line Gene CNV Profiles -1.0 -1.56751 SF268 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.04796 SIN3A ENCODE Transcription Factor Targets 1.0 null SIN3A_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SJCRH30 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.883439 SK-MEL-28 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.25502 SK-MEL-31 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.92716 SK-N-AS Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.933108 SKLMS1 CCLE Cell Line Gene CNV Profiles -1.0 -1.90562 SKLU1 CCLE Cell Line Gene CNV Profiles -1.0 -1.35135 SKMEL24 CCLE Cell Line Gene Expression Profiles -1.0 -1.59032 SKMEL31 CCLE Cell Line Gene CNV Profiles -1.0 -1.74992 SKRC20 CCLE Cell Line Gene Expression Profiles 1.0 2.19886 SLR21 CCLE Cell Line Gene Expression Profiles 1.0 2.08829 SLR23 CCLE Cell Line Gene Expression Profiles 1.0 1.67736 SLR24 CCLE Cell Line Gene Expression Profiles 1.0 2.51154 SNU-182 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.7854 SNU-423 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.973265 SNU-601 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.91 SNU182 CCLE Cell Line Gene CNV Profiles -1.0 -1.59659 SNU245 CCLE Cell Line Gene Expression Profiles -1.0 -1.55976 SNU398 CCLE Cell Line Gene Expression Profiles -1.0 -1.47595 SP1 ENCODE Transcription Factor Targets 1.0 null SP1_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SP1_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SUM 149PT Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.04879 SUM 229PE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.892195 SUPHD1 CCLE Cell Line Gene CNV Profiles 1.0 1.45316 SW 1116 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.14918 SW 480 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.973265 SW1271 CCLE Cell Line Gene CNV Profiles -1.0 -1.55257 SW579 CCLE Cell Line Gene Expression Profiles -1.0 -2.55954 SW620 BioGPS Cell Line Gene Expression Profiles 1.0 1.0603 Setleis syndrome_Skin fibroblast_GSE16524 GEO Signatures of Differentially Expressed Genes for Diseases -1.0 -0.760317 Squamous cell carcinoma of lung_Lung Tissue_GSE3268 GEO Signatures of Differentially Expressed Genes for Diseases 1.0 1.35577 TAF1 ENCODE Transcription Factor Targets 1.0 null TAF1_GM12892_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TCF3 ENCODE Transcription Factor Targets 1.0 null TCF3_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TP53 CHEA Transcription Factor Targets 1.0 null TP53-22573176-HFKS-HUMAN CHEA Transcription Factor Binding Site Profiles 1.0 null TUHR10TKB CCLE Cell Line Gene Expression Profiles -1.0 -1.72085 TYK-NU.CP-R Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.837125 U118 BioGPS Cell Line Gene Expression Profiles -1.0 -1.3941 U20S BioGPS Cell Line Gene Expression Profiles -1.0 -1.06684 U266B1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.935474 U343 CCLE Cell Line Gene Expression Profiles 1.0 1.35154 U87 BioGPS Cell Line Gene Expression Profiles -1.0 -1.1033 UACC-812 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.66988 UACC812 CCLE Cell Line Gene CNV Profiles 1.0 2.08733 UCSD-242L Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.59784 VMRCRCW CCLE Cell Line Gene Expression Profiles 1.0 1.52304 WM-266-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.852647 WTAP_KD_GDS2010_69_human_HUVEC (umbilical vein endothelial cells) GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Wholebrain BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.33137 YAP_OE_GDS3220_32_human_MCF10A GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null YMB-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04603 YMB-1-E Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.61248 YMB1 CCLE Cell Line Gene CNV Profiles 1.0 1.80107 ZR-75-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04491 alfadolone-3127 CMAP Signatures of Differentially Expressed Genes for Small Molecules 1.0 null being GeneRIF Biological Term Annotations 1.0 null bladder GTEx Tissue Gene Expression Profiles 1.0 1.10367 cSARS Bat SRBD_54Hour_None_GSE37827 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.42772 cSARS Bat SRBD_72Hour_None_GSE37827 GEO Signatures of Differentially Expressed Genes for Viral Infections -1.0 -1.41934 cell part LOCATE Predicted Protein Localization Annotations 1.0 null cellular_component LOCATE Predicted Protein Localization Annotations 1.0 null dicloxacillin-2445 CMAP Signatures of Differentially Expressed Genes for Small Molecules 1.0 null fluvoxamine-2913 CMAP Signatures of Differentially Expressed Genes for Small Molecules 1.0 null functions GeneRIF Biological Term Annotations 1.0 null inhibited GeneRIF Biological Term Annotations 1.0 null intracellular membrane-bounded organelle LOCATE Predicted Protein Localization Annotations 1.0 null intracellular organelle LOCATE Predicted Protein Localization Annotations 1.0 null intracellular part LOCATE Predicted Protein Localization Annotations 1.0 null kidney GTEx Tissue Gene Expression Profiles 1.0 1.58732 meglumine-3068 CMAP Signatures of Differentially Expressed Genes for Small Molecules 1.0 null membrane-bounded organelle LOCATE Predicted Protein Localization Annotations 1.0 null micro GeneRIF Biological Term Annotations 1.0 null mir145 GeneRIF Biological Term Annotations 1.0 null muscle GTEx Tissue Gene Expression Profiles -1.0 -1.26736 natural GeneRIF Biological Term Annotations 1.0 null nucleus LOCATE Predicted Protein Localization Annotations 1.0 null oct4 GeneRIF Biological Term Annotations 1.0 null oct4pg4 GeneRIF Biological Term Annotations 1.0 null organelle LOCATE Predicted Protein Localization Annotations 1.0 null prostate GTEx Tissue Gene Expression Profiles 1.0 0.836948 protect GeneRIF Biological Term Annotations 1.0 null rna GeneRIF Biological Term Annotations 1.0 null sponge GeneRIF Biological Term Annotations 1.0 null tetroquinone-2999 CMAP Signatures of Differentially Expressed Genes for Small Molecules 1.0 null transcript GeneRIF Biological Term Annotations 1.0 null tretinoin_homo sapiens_gpl6244_gds4180 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null valproic acid-6173 CMAP Signatures of Differentially Expressed Genes for Small Molecules 1.0 null yap1_18413746_mcf10a_gof_human_gpl570_gds3220 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations -1.0 -0.499526 znf217_22593193_mda_mb_231_gof_human_gpl570_gse35511 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations -1.0 -0.80983