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Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.928069 BT549 CCLE Cell Line Gene CNV Profiles 1.0 1.81088 BXPC-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.8508 C32 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.886429 CAL 54 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.912386 CAL-148 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.927785 CAR-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.37129 CCRT CEM BioGPS Cell Line Gene Expression Profiles 1.0 2.41625 CHAGO-K-1 COSMIC Cell Line Gene CNV Profiles 1.0 2.15465 CHAGO-K-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 3.19301 CHAGOK1 CCLE Cell Line Gene CNV Profiles 1.0 3.2803 COLO-704 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16335 COLO680N CCLE Cell Line Gene CNV Profiles -1.0 -1.35587 COLO684 CCLE Cell Line Gene CNV Profiles 1.0 1.74285 CPC-N Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.927785 CX-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.68797 CiliaryGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 0.914348 DANG CCLE Cell Line Gene CNV Profiles -1.0 -1.45547 DB Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.05828 DDR1_knockdown_169_GSE39207 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations -1.0 -2.07403 DMS 53 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.37129 DV-90 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51807 DorsalRootGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.15241 ECC10 CCLE Cell Line Gene CNV Profiles 1.0 1.78554 ETS2 MotifMap Predicted Transcription Factor Targets 1.0 null EVSAT CCLE Cell Line Gene CNV Profiles -1.0 -1.56538 Essential Thrombocytemia_Thrombocyte_GSE2006 GEO Signatures of Differentially Expressed Genes for Diseases -1.0 -1.82293 FADU CCLE Cell Line Gene CNV Profiles -1.0 -2.59674 FADU COSMIC Cell Line Gene CNV Profiles -1.0 -3.05196 FADU Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.90636 FetalThyroid BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.1935 Fetallung BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.12423 G140 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.8508 G96 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17544 GDM1 CCLE Cell Line Gene CNV Profiles 1.0 1.45638 H322T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.05619 HCC1171 CCLE Cell Line Gene CNV Profiles -1.0 -1.54881 HCC12 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51807 HCC1428 CCLE Cell Line Gene CNV Profiles -1.0 -1.86493 HCC1428 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.90182 HCC1493 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.10548 HCC1599 CCLE Cell Line Gene CNV Profiles -1.0 -2.33477 HCC1599 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.31563 HCC202 CCLE Cell Line Gene CNV Profiles -1.0 -1.39155 HCC202 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.48996 HCC2218 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.83037 HCC2279 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.1397 HCC2688 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.37076 HCC2814 CCLE Cell Line Gene CNV Profiles -1.0 -1.54822 HCC2935 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.90552 HCC366 CCLE Cell Line Gene CNV Profiles -1.0 -1.35559 HCC366 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.1945 HCC38 CCLE Cell Line Gene CNV Profiles -1.0 -1.81812 HCC4011 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.43796 HCC4017 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.43743 HCC515 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.48996 HCC70 CCLE Cell Line Gene CNV Profiles -1.0 -2.21179 HCC70 COSMIC Cell Line Gene CNV Profiles -1.0 -3.05196 HCC70 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.72945 HCT15 BioGPS Cell Line Gene Expression Profiles -1.0 -1.07835 HEK 293 T-rex BioGPS Cell Line Gene Expression Profiles 1.0 1.44906 HH CCLE Cell Line Gene CNV Profiles 1.0 1.38983 HOP-92 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.908878 HPAF-II Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.25337 HPAFII CCLE Cell Line Gene CNV Profiles -1.0 -1.88885 HS 940.T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.41902 HT-29 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.68797 HT29 CCLE Cell Line Gene CNV Profiles -1.0 -1.88485 HUH-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.43743 HUH-7 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.912386 HUH1 CCLE Cell Line Gene CNV Profiles -1.0 -1.3776 IM-95 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.78084 IM-95M Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51807 JAK2_mutant_40_GSE11003 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations -1.0 -1.53424 JHH-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.55496 JHH1 CCLE Cell Line Gene CNV Profiles 1.0 1.78344 JHOS-4 COSMIC Cell Line Gene CNV Profiles -1.0 -3.05196 JHOS4 CCLE Cell Line Gene CNV Profiles -1.0 -2.09235 K562 BioGPS Cell Line Gene Expression Profiles 1.0 0.888202 KARPAS-620 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.26029 KATO III Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.46816 KCL22 CCLE Cell Line Gene CNV Profiles 1.0 2.2471 KMM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11522 KU812 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.356 KURAMOCHI CCLE Cell Line Gene CNV Profiles -1.0 -1.45547 KURAMOCHI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.31563 KYSE-270 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.26029 LAMA84 CCLE Cell Line Gene CNV Profiles 1.0 1.50254 LOX-1_OE_GDS4262_434_human_HAECT - aortic endothelial cell line - 12 Hours GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null LU99 CCLE Cell Line Gene CNV Profiles -1.0 -1.5235 MALME 3M BioGPS Cell Line Gene Expression Profiles 1.0 0.959056 MCF7 BioGPS Cell Line Gene Expression Profiles -1.0 -1.0561 MDA MB435 BioGPS Cell Line Gene Expression Profiles 1.0 0.99986 MDA-MB-134-VI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.851646 MDA-MB-361 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.33832 MDA-MB-436 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.20997 MDAMB361 CCLE Cell Line Gene CNV Profiles -1.0 -1.52894 ME-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.999228 MEG01 CCLE Cell Line Gene CNV Profiles 1.0 1.76591 MEK_OE_GDS1925_165_human_Estrogen receptor (ER) alpha positive MCF-7 breast cancer cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null MELAS - Mitochondrial myopathy, encephalopathy, lactic acidosis and stroke-like episodes_Muscle - Striated (Skeletal) (MMHCC)_GSE1462 GEO Signatures of Differentially Expressed Genes for Diseases -1.0 -1.45642 MFM-223 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.20997 MG-63 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.05739 MKN-74 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.995302 MOLM13 CCLE Cell Line Gene CNV Profiles 1.0 1.94968 MT-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.928143 MV-4-11 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03041 NAMALWA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.90594 NCI-H1092 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.332 NCI-H1155 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51807 NCI-H1355 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.22596 NCI-H1650 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.851646 NCI-H1703 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.11249 NCI-H1781 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.16707 NCI-H2009 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.081 NCI-H2198 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.928069 NCI-H2804 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.928069 NCI-H292 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.950231 NCI-H322T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.05619 NCI-H345 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.33832 NCI-H522 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06327 NCI-H820 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.57337 NCI-H889 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.70474 NCI-H929 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.998246 NCIH1092 CCLE Cell Line Gene CNV Profiles 1.0 1.35462 NOMO1 CCLE Cell Line Gene CNV Profiles 1.0 1.35676 OCI-AML2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.937496 OCI-AML3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51807 OCI-AML5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.78137 OCI-LY-10 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.00802 OCI-M2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.33552 OCUM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.974266 OPM-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.867417 OVCA 432 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.43796 OVCAR8 BioGPS Cell Line Gene Expression Profiles -1.0 -1.41878 PANC 08.13 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19495 PANC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.975876 PANC1 BioGPS Cell Line Gene Expression Profiles 1.0 1.3813 PFEIFFER Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.995302 PK1 CCLE Cell Line Gene CNV Profiles -1.0 -3.16898 PL-21 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.08692 Primary hematopoietic stem cells Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles -1.0 -0.944063 RERF-LC-KJ Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.43796 RT-112 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.90594 Rectal Mucosa Donor 31 Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles 1.0 0.842502 SK-MM-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.843991 SKNMC CCLE Cell Line Gene CNV Profiles 1.0 2.49206 SNU-449 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.912386 SNU-620 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.866448 SNU61 CCLE Cell Line Gene CNV Profiles -1.0 -1.54543 SNU620 CCLE Cell Line Gene CNV Profiles 1.0 1.61836 SRC_UP.V1 MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations 1.0 null SU-DHL-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.41902 SU-DHL-6 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.885762 SW 1116 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.31514 SW 1417 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.56163 SW1116 CCLE Cell Line Gene CNV Profiles -1.0 -1.61134 SW1271 CCLE Cell Line Gene CNV Profiles -1.0 -1.6618 SW1417 CCLE Cell Line Gene CNV Profiles -1.0 -1.76051 SYNCRIP_OE_GDS1806_82_human_T-lymphocytes from normal donors were activated with anti-CD3 and IL2 GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Skeletal Muscle Male Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles 1.0 1.02597 SkeletalMuscle BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 0.944204 SubthalamicNucleus BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.03869 TCF4 MotifMap Predicted Transcription Factor Targets 1.0 null TE441T CCLE Cell Line Gene CNV Profiles 1.0 1.56421 THP-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51807 THP1 CCLE Cell Line Gene CNV Profiles 1.0 1.60873 TMD8 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.864996 TOV-112D Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.912386 TYK-NU.CP-R Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.974266 TestisGermCell BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.958468 Thymus BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -2.3373 Thyroid BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.59294 TrigeminalGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.53557 U266B1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.885762 UKE-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.78579 WSU-DLCL2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51807 Wholebrain BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.22727 abnormal emotion/affect behavior GWASdb SNP-Phenotype Associations 1.0 0.249215 abnormality of nervous system physiology GWASdb SNP-Phenotype Associations 1.0 0.050382 abnormality of the nervous system GWASdb SNP-Phenotype Associations 1.0 0.037694 all GWASdb SNP-Phenotype Associations 1.0 0.028011 astrocytes BioGPS Cell Line Gene Expression Profiles -1.0 -2.08727 behavioral abnormality GWASdb SNP-Phenotype Associations 1.0 0.082664 bipolar affective disorder GWASdb SNP-Phenotype Associations 1.0 0.428141 bipolar disorder GWASdb SNP-Disease Associations 1.0 0.501569 cetuximab_homo sapiens_gpl570_gse21483 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null cognitive disorder GWASdb SNP-Disease Associations 1.0 0.086542 ctnnb1_21914722_ls174t_lof_human_gpl570_gds4386 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations 1.0 0.484615 depression GWASdb SNP-Phenotype Associations 1.0 0.345797 disease GWASdb SNP-Disease Associations 1.0 0.023582 disease of mental health GWASdb SNP-Disease Associations 1.0 0.040302 mania GWASdb SNP-Phenotype Associations 1.0 0.428141 mood disorder GWASdb SNP-Disease Associations 1.0 0.26857 phenotypic abnormality GWASdb SNP-Phenotype Associations 1.0 0.028027 rnf2_20805357_u2os_osteosarcoma_lof_human_gpl570_gse23035 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations -1.0 -0.312552 znf217_22593193_mda_mb_231_gof_human_gpl570_gse35511 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations 1.0 0.140669